Deliverables and milestones

Start date of the project, month 1, is October 1, 2012.

List of Deliverables

  WP

Deliver. No.

Deliverable

Lead Benefic

Nature

Dissemination

Month

8

8.1 Collaborative Workspace P1 O CO 1

8

8.2 Consortium Agreement P1 O CO 1

5

5.1 System for data storage and transfer among the members of the project P6 O CO 12

4

4.1 Local interaction maps for selected genes in A. thaliana and Z. mays P1 R PU 42

7

7.1 Set of appropriate genes and sequences for analyses P8 R PU 24

2

2.1 Optimized kit for ChIP-Seq analyses, available for plant community P2 O RE 30

2

2.2 Cost-effective genome-wide DNA methylation screen developed P2 R CO 30

3

3.1 Set of novel chromatin and TF associated proteins P3 R PU 30

5

5.2 Automated pipeline for the analysis of 4C and ChIA-PET data P6 O PU 30

7

7.2 Hypotheses from modeling work for laboratory validation P8 R PU 30

2

2.3 Genome-wide profile of 5-mC, histone modifications, chromatin factors and transcriptome in A. thaliana and crop species P2 R PU 38

1

1.1 Courses, workshops, secondments (month 6-42) P1 O PU,RE 6-42

1

1.2 Certificate for ESRs (month 42) P1 O PU 42

4

4.2 Genome-wide interaction maps, and causal relations between interactions & gene activity P1 R PU 42

4

4.3 Genomic maps of protein factor mediated chromosomal interactions P1 R PU 42

5

5.3 Meta-analysis of all genomic data-sets (month 36) P6 R PU 42

6

6.1 Spatial model of the 3D nuclear distribution of proteins and genes P9 R PU 42

7

7.3 (Some) hypotheses confirmed based on experimental approaches P8 R PU 42

8

8.3 Three annual reports (month 18, 30, 42) P1 R PU 18, 30, 40

9

9.1

Kick-off meeting, three annual meetings, and an open conference with workshop targeted to industry P1 E RE, PU 42

9

9.2

Dissemination to general public via high-school lectures, movies and reviews P4 P,O PU 42

E = Event; O = Other; P = Publication; R = Report; CO = Confidential; PU = Public; RE = Restricted

 

 

List of Milestones
WP Milest.

No.

Milestone

Lead benefic Month

2

2.1

Protocol optimization for cell-type specific ChIP: Protocol tested by user group

P2

12

3

3.1

Identification novel chromatin and TF binding proteins: Data quality validated by Co-IP

P3

18

4

4.1

4C-method established for plants: Protocol tested by user group

P1

14

4

4.2

ChIA-PET protocol adapted to plant material: Protocol tested by user group

P3

24

5

5.1

Computational and statistical methodology established for 4C and ChIA-PET protocols: Software validated by user group

P6

24

6

6.1

Combined immunodetection-FISH protocol for plant tissues: Protocol tested by user group

P9

12

7

7.1

ODE framework developed: Software validated by user group

P8

15

9

9.1

Web portal running for public and private access: Web portal tested by user group

P4

4